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Install

From source (Rust)​

OpenMassSpec targets Rust 2021, MSRV 1.75. The umbrella workspace lives at the OpenMassSpec repository and pulls the vendor crates in via path dependencies; for a stand-alone build, clone all seven repos side by side:

.
+-- OpenMassSpecCore/
+-- OpenMassSpec/
+-- OpenTFRaw/
+-- OpenTimsTDF/
+-- OpenWRaw/
+-- OpenARaw/
+-- OpenSXRaw/

Then build the CLI:

cd OpenMassSpec
cargo build --release -p openmassspec-io-cli
./target/release/vendor2mzml --help

Python (PyPI)​

The Python bindings are distributed as openmassspec-io. Wheels are abi3-py39, so a single wheel covers Python 3.9 and newer.

pip install openmassspec-io          # core
pip install 'openmassspec-io[arrow]' # with pyarrow zero-copy bridge

Pre-built binaries​

Release builds of vendor2mzml are attached to each GitHub release for:

  • linux-x86_64
  • linux-aarch64
  • macos-x86_64
  • macos-aarch64
  • windows-x86_64

Download the archive for your platform from the Releases page, extract, and put vendor2mzml on your PATH.